Description

Statistics for FASTA or FASTQ files

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

files{:bash}

:file

One or more FASTA or FASTQ files

*.{fasta,fastq,fasta.gz,fastq.gz,fq,fq.gz}

Output

name:type
description
pattern

stats{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*.tsv{:bash}

:file

Tab-separated output file with basic sequence statistics.

*.{tsv}

multiqc{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]

*_mqc.txt{:bash}

:file

MultiQC ready table

*.{_mqc.txt}

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

seqfu
GPL v3

Cross-platform compiled suite of tools to manipulate and inspect FASTA and FASTQ files