Description

Search and calculate a score for similar sequences in a query and a target database.

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

db_query{:bash}

:file

Query database

meta2{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

db_target{:bash}

:file

Target database

Output

name:type
description
pattern

db_search{:bash}

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

${prefix}/{:bash}

:directory

an MMseqs2 database with search results

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

included in
proteinannotator
maintainer
Github user Joon-Klaps
get in touch
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